bioalpha.h5ad_map.SparseDatasetMap

class bioalpha.h5ad_map.SparseDatasetMap(group: Group)

Analogous to h5py.Dataset, but for sparse matrices. Support converting bettween csr, csc and dense formats.

Methods

append(sparse_matrix)
as_format(spformat, file[, key, force])	Convert backed sparse matrix to other format without load full matrix to memory.
from_dataset(dataset, spformat, file, key[, ...])	Convert h5py.Dataset to SparseDatasetMap without load full matrix to memory.
to_backed()
to_csc(file[, key, force])	Alias of .as_format("csc",...)
to_csr(file[, key, force])	Alias of .as_format("csr",...)
to_dense(file, key[, force])	Convert backed sparse matrix to dense without load full matrix to memory.
to_memory()

Attributes

data
dtype
file
format_str
h5py_group
indices
indptr
name
shape
value