Tutorial

In this sections, we showcase some tutorials doing some tasks with BioAlpha.

Standard

For getting started, we introced a simple pipeline BioAlpha Tutorial and BioAlpha Mapping File Tutorial (reduce memory) to process and visualize single-cell ma-seq with two Human pbmc datasets from 10xGENOMICS.

_images/harmony.png _images/tsne.png _images/umap.png _images/venice.png

AUCell enrichment analysis

AUCell AUCell Tutorial and AUCell Mapping File Tutorial (reduce memory) is a method to identify cells with active gene regulatory networks in single-cell RNA-seq data.

_images/plot_aucell_heatmap.png _images/plot_aucell.png