bioalpha.singlecell.download_GEO_data

bioalpha.singlecell.download_GEO_data(id: str, destdir: str = './', supdir: str = './data/', return_gse: bool = True, **kwargs)

Download suplementary file of data from GEO (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi).

Parameters:

• id (str) – Id of dataset (eg: GSE100000)

• destdir (str, default = './') – Direction to save SOFT file.

• supdir (str, default = './data/') – Direction to save suplementary file.

• return_gse (bool, default = False) – Return gse class or not.

Return type:

Depend of return_gse. If True, return gse class else None.